Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M23 Chr18 Chr19p Chr5p_UniqueNum	BreastC_M23 Chr18 Chr19p Chr5p_pVal	BreastC_M23 Chr18 Chr19p Chr5p_Unique	BreastC_M23 Chr18 Chr19p Chr5p_UniqueNum	BreastC_M23 Chr18 Chr19p Chr5p_pVal	BreastC_M23 Chr18 Chr19p Chr5p_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN	14	ADNP2|FOCAD|HAUS6|IER3IP1|KLHL9|NFATC1|PIAS2|PIK3C3|PLGRKT|RANBP6|RRAGA|SMARCA2|SNAPC3|SOCS6	1.15671307962e-07	0	1.15671307962e-07		0	1.15671307962e-07	
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	14	BRD9|CABYR|CEP72|CLTA|CREB3|EXOC3|ICE1|LPCAT1|NPC1|OSBPL1A|PDCD6|RGP1|RNF38|TMEM8B	1.019522439e-06	0	1.019522439e-06		0	1.019522439e-06	
BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	9	C5ORF22|DR1|KDM3A|LPCAT1|NARS|RPRD1A|SMAD2|SUB1|TGIF1	9.60391445783e-05	0	9.60391445783e-05		0	9.60391445783e-05	
CATTTCA_MIR203	11	DNAJC21|DR1|IGFBP5|LMBRD2|MEX3C|PLAA|RNF38|SELENOT|SOCS6|SPIRE1|VAPA	0.000127222709254	0	0.000127222709254		0	0.000127222709254	
Chiche(PMID: 24644022)-2014_M7.3	8	CDC37L1|ETFRF1|KIAA1468|KIAA2026|LINC00909|MIB1|PDCD6|VPS4B	0.000279494292876	0	0.000279494292876		0	0.000279494292876	
ERB2_UP.V1_DN	9	ANKRD12|ICE1|MPDZ|PMAIP1|POLI|RANBP6|RBBP8|RPRD1A|ZCCHC2	0.000175555631714	0	0.000175555631714		0	0.000175555631714	
ESCRT III complex disassembly [GoID:GO:1904903; evidenceTypes:NAS]	3	CHMP1B|CHMP5|VPS4B	0.000116108443255	0	0.000116108443255		0	0.000116108443255	
ESCRT complex disassembly [GoID:GO:1904896; evidenceTypes:NAS]	3	CHMP1B|CHMP5|VPS4B	0.000116108443255	0	0.000116108443255		0	0.000116108443255	
GSE369_SOCS3_KO_VS_WT_LIVER_DN	8	AK3|BRD9|CHMP1B|DNAJC21|KIAA1468|NFATC1|PLGRKT|TMEM98	0.000739463376459	0	0.000739463376459		0	0.000739463376459	
GSE411_UNSTIM_VS_400MIN_IL6_STIM_SOCS3_KO_MACROPHAGE_UP	8	ANKRD12|C5ORF51|CDC37L1|HINT2|KIAA1468|LPCAT1|PLPP6|SLC12A7	0.000714544388533	0	0.000714544388533		0	0.000714544388533	
GSE1740_MCSF_VS_MCSF_AND_IFNG_DAY2_DERIVED_MACROPHAGE_DN	10	CEP192|ETFRF1|HAUS1|KLHL9|LPCAT1|MEX3C|RANBP6|RGP1|RRAGA|TRAPPC8	3.15042658444e-05	0	3.15042658444e-05		0	3.15042658444e-05	
GSE2770_IL12_AND_TGFB_VS_IL4_TREATED_ACT_CD4_TCELL_2H_DN	8	CEP192|ETFRF1|KLHL9|LPCAT1|MIB1|NDUFV2|RANBP6|RGP1	0.000643820767026	0	0.000643820767026		0	0.000643820767026	
GSE7348_UNSTIM_VS_TOLERIZED_AND_LPS_STIM_MACROPHAGE_UP	7	CHMP1B|GNE|IMPACT|MTRR|PDCD6|POLI|THUMPD2	0.000877120640276	0	0.000877120640276		0	0.000877120640276	
GSE8515_CTRL_VS_IL6_4H_STIM_MAC_UP	8	C18ORF25|CEP76|DR1|DYM|MEX3C|OSBPL1A|PLAA|SMAD2	0.000934174021399	0	0.000934174021399		0	0.000934174021399	
GSE12001_MIR223_KO_VS_WT_NEUTROPHIL_DN	8	C5ORF22|ERMP1|ICE1|KDM3A|POLI|SMARCA2|SOCS6|VPS4B	0.000765077806829	0	0.000765077806829		0	0.000765077806829	
GSE14000_UNSTIM_VS_4H_LPS_DC_TRANSLATED_RNA_UP	8	AFG3L2|CEP76|GBA2|HAUS1|MTMR12|SHB|SOCS6|TMX3	0.000791401856846	0	0.000791401856846		0	0.000791401856846	
GSE17721_CTRL_VS_PAM3CSK4_0.5H_BMDC_UP	8	C5ORF51|INO80C|MYO5B|NSUN2|PIAS2|PLAA|RPRD1A|UBAP1	0.000643820767026	0	0.000643820767026		0	0.000643820767026	
GSE21033_CTRL_VS_POLYIC_STIM_DC_6H_UP	10	ADNP2|CHMP1B|DLG4|MEX3C|NAPG|NPC1|PAPD7|PIK3C3|TOPORS|UBAP1	3.01570882093e-05	0	3.01570882093e-05		0	3.01570882093e-05	
GSE22103_LPS_VS_GMCSF_AND_IFNG_STIM_NEUTROPHIL_DN	8	C5ORF22|DCAF12|LPCAT1|MBD1|METTL4|MTRR|NPC1|PPP4R1	0.000765077806829	0	0.000765077806829		0	0.000765077806829	
GSE33513_TCF7_KO_VS_HET_EARLY_THYMIC_PROGENITOR_DN	8	BRD9|DLG4|EXOSC3|NPC1|PIGN|SUB1|TMX3|TPGS2	0.000666736850799	0	0.000666736850799		0	0.000666736850799	
Human BoneMarrow_Zhan07_458genes (17023574-TableS2)	13	ANKRD12|APTX|CBWD1|CDC37L1|CHMP1B|DNAJC21|FASTKD3|NFATC1|SUB1|TGIF1|TIMM21|TOPORS|ZCCHC2	5.25449031728e-05	0	5.25449031728e-05		0	5.25449031728e-05	
Human Breast_Turner10_40genes_DownRegulated Genes (20101236-SuppTable7b)	4	CAAP1|CLTA|PLAA|VCP	0.000371045862028	0	0.000371045862028		0	0.000371045862028	
Human Colon_Jorissen08_829genes (19088021-supptable2)	21	C18ORF25|C18ORF32|EPG5|HAUS1|HDHD2|IER3IP1|KDSR|KIAA1468|METTL4|NARS|PDCD6|RBBP8|SEPSECS|SLC25A51|SMAD2|SMAD4|SOCS6|TIMM21|TPGS2|TXNL1|WDR7	4.03113799712e-06	0	4.03113799712e-06		0	4.03113799712e-06	
Human HeadandNeck_Jarvinen06_502genes (16715129-SuppTable4)	15	CHMP5|CLTA|FECH|FOCAD|HINT2|KDSR|MTRR|NDUFB6|PHLPP1|PLGRKT|ROCK1|SLC12A7|SNAPC3|TOPORS|UBAP1	5.08277402386e-05	0	5.08277402386e-05		0	5.08277402386e-05	
Human Leukemia_Schoch05_1374genes (15902281-TableS1e)	17	BRD9|C5ORF22|CEP72|DROSHA|EXOC3|FASTKD3|GOLPH3|ICE1|LPCAT1|MTMR12|MTRR|PAIP1|PAPD7|PDCD6|SLC12A7|SUB1|WDR70	6.4889124545e-05	0	6.4889124545e-05		0	6.4889124545e-05	
Human Lung_Olejniczak07_36genes (17426248-TableS2a)	5	FECH|NARS|PHLPP1|PMAIP1|ZCCHC2	1.37715880481e-05	0	1.37715880481e-05		0	1.37715880481e-05	
Human Lung_Olejniczak07_80genes (17426248-TableS2b)	19	CXXC1|FECH|KDSR|KIAA1468|MBD1|MYO5B|NARS|PHLPP1|PIGN|PMAIP1|POLI|RTTN|SMAD4|SOCS6|TIMM21|TMX3|TXNL1|VPS4B|ZCCHC2	7.29547407803e-23	0	7.29547407803e-23		0	7.29547407803e-23	
Human Lymphoma_Ando03_15genes (14556665-Table1)	2	PTPN2|SMAD4	0.000998623293558	0	0.000998623293558		0	0.000998623293558	
Human Pancreas_Akada05_44genes (15837765-Table2)	4	PIK3C3|RALBP1|SLC25A51|SMAD2	0.000632684668766	0	0.000632684668766		0	0.000632684668766	
Human Pancreas_Harada08_30genes (17952125-Table1b)	6	KDSR|KIAA1468|PHLPP1|SMAD4|TIMM21|VPS4B	1.65575581318e-08	0	1.65575581318e-08		0	1.65575581318e-08	
IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR	15	ANKRD12|C5ORF22|C18ORF32|CAMKMT|CDC37L1|NAPG|PIAS2|PRSS16|RNMT|SEH1L|SLC25A51|SLC45A3|SPIRE1|UBAP1|WDR7	0.000279511766172	0	0.000279511766172		0	0.000279511766172	
MILI_PSEUDOPODIA_HAPTOTAXIS_UP	18	DNAJA1|GOLPH3|IFT74|MIB1|MLLT3|NUDT2|PAIP1|PTPN2|RANBP6|RBBP8|ROCK1|SELENOT|SMCHD1|TOPORS|TPGS2|TRAPPC8|TXNL1|VPS4B	3.3260890383e-06	0	3.3260890383e-06		0	3.3260890383e-06	
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_18	2	KDSR|SMAD4	0.000998623293558	0	0.000998623293558		0	0.000998623293558	
NIKOLSKY_BREAST_CANCER_5P15_AMPLICON	6	BRD9|CEP72|EXOC3|LPCAT1|PDCD6|SLC12A7	8.63336003254e-08	0	8.63336003254e-08		0	8.63336003254e-08	
RCGCANGCGY_NRF1_Q6	20	CCDC107|CCDC171|DNAJA1|INO80C|KDM3A|KDM4C|LRRIQ3|MIB1|NAPG|PHLPP1|PTPN2|RALBP1|RBBP8|SEH1L|SELENOT|SLC25A51|TOPORS|TXNL1|ZBTB5|ZCCHC7	0.000522003935276	0	0.000522003935276		0	0.000522003935276	
REACTOME_DOWNREGULATION_OF_SMAD2_3_SMAD4_TRANSCRIPTIONAL_ACTIVITY	3	SMAD2|SMAD4|TGIF1	0.000876758298836	0	0.000876758298836		0	0.000876758298836	
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP	12	AK3|ANKRD12|CEP76|DNAJC21|HAUS6|IGFBP5|IMPACT|MIB1|PMAIP1|RPRD1A|SEH1L|SMCHD1	0.000692070110752	0	0.000692070110752		0	0.000692070110752	
autophagy of peroxisome [GoID:GO:0030242; evidenceTypes:IBA|IMP]	2	PIK3C3|TRAPPC8	0.000998623293558	0	0.000998623293558		0	0.000998623293558	
cell separation after cytokinesis [GoID:GO:0000920; evidenceTypes:IMP]	3	CHMP1B|CHMP5|VPS4B	0.000518130657351	0	0.000518130657351		0	0.000518130657351	
centrosome cycle [GoID:GO:0007098; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	7	CEP72|CEP76|CHMP1B|CHMP5|HAUS1|HAUS6|VPS4B	0.0001687985954	0	0.0001687985954		0	0.0001687985954	
centrosome duplication [GoID:GO:0051298; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS|TAS]	5	CEP72|CEP76|CHMP1B|CHMP5|VPS4B	0.000322853677966	0	0.000322853677966		0	0.000322853677966	
chr5p13	7	C5ORF22|C5ORF51|DNAJC21|GOLPH3|LMBRD2|SUB1|WDR70	2.28640318264e-07	0	2.28640318264e-07		0	2.28640318264e-07	
chr5p15	11	BRD9|CEP72|EXOC3|FASTKD3|ICE1|LPCAT1|MTMR12|MTRR|NSUN2|PAPD7|SLC12A7	4.63331564954e-11	0	4.63331564954e-11		0	4.63331564954e-11	
chr9p11	4	DCAF12|EXOSC3|HINT2|RPP25L	9.37951436858e-06	0	9.37951436858e-06		0	9.37951436858e-06	
chr9p12	3	NFX1|SHB|SMU1	0.000424128468155	0	0.000424128468155		0	0.000424128468155	
chr9p13	17	APTX|CHMP5|DCTN3|FAM214B|GBA2|GNE|NDUFB6|NUDT2|PIGO|SLC25A51|SMU1|TESK1|TMEM8B|VCP|ZBTB5|ZCCHC7|ZNF658	7.62206762622e-21	0	7.62206762622e-21		0	7.62206762622e-21	
chr9p21	9	CAAP1|DNAJA1|FOCAD|IFT74|PLAA|RRAGA|TOPORS|TUSC1|UBAP1	2.44056931155e-12	0	2.44056931155e-12		0	2.44056931155e-12	
chr9p22	7	CCDC171|HAUS6|KLHL9|MLLT3|SNAPC3|TOPORS|ZDHHC21	6.28670822545e-08	0	6.28670822545e-08		0	6.28670822545e-08	
chr9p24	13	AK3|CBWD1|CDC37L1|DMAC1|ERMP1|KDM4C|KIAA2026|MPDZ|PLGRKT|PLPP6|RANBP6|SMARCA2|UHRF2	7.04918232786e-17	0	7.04918232786e-17		0	7.04918232786e-17	
chr18p11	21	AFG3L2|ANKRD12|CEP76|CEP192|CHMP1B|FAM210A|METTL4|NAPG|NDUFV2|PPP4R1|PSMG2|PTPN2|RALBP1|RBBP8|RNMT|SEH1L|SMCHD1|SPIRE1|TGIF1|VAPA|ZNF519	1.38539147549e-27	0	1.38539147549e-27		0	1.38539147549e-27	
chr18q11	8	CABYR|IMPACT|KCTD1|MIB1|NPC1|OSBPL1A|RBBP8|ROCK1	3.35652691309e-10	0	3.35652691309e-10		0	3.35652691309e-10	
chr18q12	9	CXXC1|EPG5|IER3IP1|INO80C|PIAS2|PIK3C3|RPRD1A|TPGS2|TRAPPC8	1.89165341267e-10	0	1.89165341267e-10		0	1.89165341267e-10	
chr18q21	22	C18ORF25|C18ORF32|DYM|FECH|HAUS1|HDHD2|KDSR|KIAA1468|MBD1|MBD2|MEX3C|NARS|PHLPP1|PIGN|PMAIP1|POLI|SMAD2|SMAD4|TXNL1|VPS4B|WDR7|ZCCHC2	2.77083042957e-28	0	2.77083042957e-28		0	2.77083042957e-28	
chr18q22	5	LINC00909|RTTN|SOCS6|TIMM21|TMX3	2.29779258927e-06	0	2.29779258927e-06		0	2.29779258927e-06	
chr18q23	3	ADNP2|NFATC1|PARD6G-AS1	0.000518130657351	0	0.000518130657351		0	0.000518130657351	
ciliary basal body-plasma membrane docking [GoID:GO:0097711; evidenceTypes:TAS]	6	CEP72|CEP76|CEP192|DCTN3|HAUS1|HAUS6	0.000430871845077	0	0.000430871845077		0	0.000430871845077	
macromolecule methylation [GoID:GO:0043414; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	12	CAMKMT|CXXC1|KDM3A|KDM4C|MBD2|METTL4|MTRR|NSUN2|RNMT|SMAD4|THUMPD2|VCP	1.67819574741e-05	0	1.67819574741e-05		0	1.67819574741e-05	
methylation [GoID:GO:0032259; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	12	CAMKMT|CXXC1|KDM3A|KDM4C|MBD2|METTL4|MTRR|NSUN2|RNMT|SMAD4|THUMPD2|VCP	0.000113937380699	0	0.000113937380699		0	0.000113937380699	
microtubule organizing center organization [GoID:GO:0031023; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	7	CEP72|CEP76|CHMP1B|CHMP5|HAUS1|HAUS6|VPS4B	0.000255759469399	0	0.000255759469399		0	0.000255759469399	
mitotic metaphase plate congression [GoID:GO:0007080; evidenceTypes:IBA|IDA|IMP]	4	CHMP1B|CHMP5|SEH1L|VPS4B	0.00091990927718	0	0.00091990927718		0	0.00091990927718	
regulation of centrosome duplication [GoID:GO:0010824; evidenceTypes:IDA|IEA|IMP|ISS|NAS]	4	CEP76|CHMP1B|CHMP5|VPS4B	0.000463925272422	0	0.000463925272422		0	0.000463925272422	
regulation of mitotic spindle assembly [GoID:GO:1901673; evidenceTypes:IDA|IMP]	3	CHMP1B|CHMP5|VPS4B	0.000743834742163	0	0.000743834742163		0	0.000743834742163	
spindle assembly [GoID:GO:0051225; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	6	CEP192|CHMP1B|CHMP5|HAUS1|HAUS6|VPS4B	0.000252940746708	0	0.000252940746708		0	0.000252940746708	
spindle organization [GoID:GO:0007051; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	7	CEP72|CEP192|CHMP1B|CHMP5|HAUS1|HAUS6|VPS4B	0.00071917481996	0	0.00071917481996		0	0.00071917481996	
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GoID:GO:0043162; evidenceTypes:IBA|IC|IEA|IMP|ISS|NAS]	3	PLAA|UBAP1|VPS4B	0.000743834742163	0	0.000743834742163		0	0.000743834742163	
